BioImage Information Index

Biii is a website for organizing bioimage analysis resources. We manually edit following pages, for you to search tools, workflows and functions for bioimage analysis:

Please enjoy!



GiovanniCardone's picture

Image Composite Editor

ICE (Image Composite Editor) is a fast, fully automatic software by Microsoft that can create large montages from overlapping images.

GiovanniCardone's picture

GelBandFitter

GelBandFitter is a user-friendly software specific for analysis of protein gels and estimation of relative protein content.

graemeball's picture

PopulationProfiler

PopulationProfiler – is light-weight cross-platform open-source tool for data analysis in image-based screening experiments. The main idea is to reduce per-cell measurements to per-well distributions, each represented by a histogram. These can be optionally further reduced to sub-type counts based on gating (setting bin ranges) of known control distributions and local adjustments to histogram shape. Such analysis is necessary in a wide variety of applications, e.g.

irene's picture

Cellquant

Tags: 
irene's picture

MembraneQuant

Package/Library: 
QuantCenter
irene's picture

HistoQuant

Package/Library: 
QuantCenter
kozubek's picture

Human colon tissue

Biological object: 
in silico colon tissue
Size (MB): 
8 500
kozubek's picture

Clustered cell nuclei

Biological object: 
in silico clustered cell nuclei
Size (MB): 
11 200
kota's picture

v3dlib

v3dlib library is a cross-platform C++ library written in wxWidgets for displaying 3D images. The most important part of the library is a window that can display 3D images of various types (RGB, RGB16, GRAY8, GRAY16, and float). The window can easily be extended of a new functionality and is used in many applications (e.g., viewer3d, Acquiarium, batchcrop, and others).

kota's picture

Vaa3D

Vaa3D [1, 2, 3] is a handy, fast, and versatile 3D/4D/5D Image Visualization & Analysis System for Bioimages & Surface Objects. It also provides many unique functions ... It is also Open Source, supports a very simple and powerful plugin interface and thus can be extended & enhanced easily...

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