BioImage Information Index

Biii is a website for organizing bioimage analysis resources. We manually edit following pages, for you to search tools, workflows and functions for bioimage analysis:

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GiovanniCardone's picture

Advanced Cell Classifier

Advanced Cell Classifier is a data analyzer program to evaluate cell-based high-content screens and tissue section images. The basic aim is to provides a very accurate high-content screen analysis with minimal user interaction, offering access to a variety of advanced machine learning methods.

GiovanniCardone's picture

imageHTS

imageHTS is an R/Bioconductor package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote data and facilitates the dissemination of high-throughput microscopy-based datasets.

Anonymous's picture

OrientationJ

volker's picture

FISH-quant

Workflow Language: 
MATLAB
volker's picture

jicbioimage

The jicbioimage [1] Python package makes it easy to explore microscopy data in a programmatic fashion. Exploring images via coding means that the exploratory work becomes recorded and reproducible. Furthermore, it makes it easier to convert the exploratory work into (semi) automated analysis work flows.

Features Built in functionality for working with microscopy data Automatic generation of audit trails IPython integration Cross-platform: Linux, Mac and Windows are all supported Works with Python 2.7, 3.3 and 3.4

Anonymous's picture

Squassh

kota's picture

InfectionCounter

Workflow Language: 
ImageJ Macro Language
kota's picture

Find Maxima

Package/Library: 
ImageJ

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