Biblio

Found 88 results

2016

[2704] Tang Y, Hendriks J, Gensch T, Dai L, Li J. 2016. Automatic Bayesian single molecule identification for localization microscopy.. Sci Rep. 6:33521.

[2687] Pageon SV, Nicovich PR, Mollazade M, Tabarin T, Gaus K. 2016. Clus-DoC: A combined cluster detection and colocalization analysis for single-molecule localization microscopy data.. Mol Biol Cell.

[Ghani2016] Ghani MUsman, Mesadi F, Kanık SDemir, Argunşah AÖzgür, Hobbiss AFelicity, Israely I, Ünay D, Taşdizen T, Çetin M. 2016. Dendritic Spine Classification using Shape and Appearance Features based on Two-Photon Microscopy. Journal of Neuroscience Methods. :-.

[2695] Mazouchi A, Milstein JN. 2016. Fast Optimized Cluster Algorithm for Localizations (FOCAL): a spatial cluster analysis for super-resolved microscopy.. Bioinformatics. 32(5):747-54.

[2651] Culley S, Towers GJ, Selwood DL, Henriques R, Grove J. 2016. Infection Counter: Automated Quantification of in Vitro Virus Replication by Fluorescence Microscopy.. Viruses. 8(7)

[2723] Olsson TSG, Hartley M. 2016. jicbioimage: a tool for automated and reproducible bioimage analysis. PeerJ. 4:e2674.

[2656] Legland D, Arganda-Carreras I, Andrey P. 2016. MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ.. Bioinformatics.

[2662] Müller M, Mönkemöller V, Hennig S, Hübner W, Huser T. 2016. Open-source image reconstruction of super-resolution structured illumination microscopy data in ImageJ.. Nat Commun. 7:10980.

[2683] Afshar Y, Sbalzarini1 IF. 2016. A Parallel Distributed-Memory Particle Method Enables Acquisition-Rate Segmentation of Large Fluorescence Microscopy Images. PLOS One. 11(4):e0152528.

[2665] Křížek P, Lukeš T, Ovesný M, Fliegel K, Hagen GM. 2016. SIMToolbox: a MATLAB toolbox for structured illumination fluorescence microscopy.. Bioinformatics. 32(2):318-20.

2015

[2658] Feng L, Zhao T, Kim J. 2015. neuTube 1.0: A New Design for Efficient Neuron Reconstruction Software Based on the SWC Format 1,2,3. eNeuro. 2(1)

[2628] Munjal A, Philippe J-M, Munro E, Lecuit T. 2015. A self-organized biomechanical network drives shape changes during tissue morphogenesis.. Nature. 524(7565):351-5.

[2661] Levet F, Hosy E, Kechkar A, Butler C, Beghin A, Choquet D, Sibarita J-B. 2015. SR-Tesseler: a method to segment and quantify localization-based super-resolution microscopy data. Nature Methods. 12

2014

[2509] Fernández JA, Bankhead P, Zhou H, J McGeown G, Curtis TM. 2014. Automated detection and measurement of isolated retinal arterioles by a combination of edge enhancement and cost analysis.. PLoS One. 9(3):e91791.

[2613] Qi J, Wang Y, Yu T, Cunha A, Wu B, Vernoux T, Meyerowitz E, Jiao Y. 2014. Auxin depletion from leaf primordia contributes to organ patterning.. Proc Natl Acad Sci U S A. 111(52):18769-74.

[2428] Cordelières FP, Bolte S. 2014. Experimenters' guide to colocalization studies: finding a way through indicators and quantifiers, in practice.. Methods Cell Biol. 123:395-408.

[2634] Boudaoud A, Burian A, Borowska-Wykręt D, Uyttewaal M, Wrzalik R, Kwiatkowska D, Hamant O. 2014. FibrilTool, an ImageJ plug-in to quantify fibrillar structures in raw microscopy images.. Nat Protoc. 9(2):457-63.

[2591] Herbert AD, Carr AM, Hoffmann E. 2014. FindFoci: A Focus Detection Algorithm with Automated Parameter Training That Closely Matches Human Assignments, Reduces Human Inconsistencies and Increases Speed of Analysis.. PLoS One. 9(12):e114749.

[2549] Small A, Stahlheber S. 2014. Fluorophore localization algorithms for super-resolution microscopy.. Nat Methods. 11(3):267-79.

[2607] Pérez-Escudero A, Vicente-Page J, Hinz RC, Arganda S, de Polavieja GG. 2014. idTracker: tracking individuals in a group by automatic identification of unmarked animals.. Nat Methods. 11(7):743-8.

[2548] Chenouard N, Smal I, de Chaumont F, Maška M, Sbalzarini IF, Gong Y, Cardinale J, Carthel C, Coraluppi S, Winter M et al.. 2014. Objective comparison of particle tracking methods.. Nat Methods. 11(3):281-9.

[2621] Gyori BM, Venkatachalam G, Thiagarajan PS, Hsu D, Clement M-V. 2014. OpenComet: an automated tool for comet assay image analysis.. Redox Biol. 2:457-65.

[2496] Pengo T, Holden SJ, Manley S. 2014. PALMsiever: a tool to turn raw data into results for single-molecule localization microscopy.. Bioinformatics.

[2630] Feillet C., Krusche P., Tamanini F., Janssens R.C, Downey M.J, Martin P., Teboul M., Saito S., Levi F.A, Bretschneider T. et al.. 2014. Phase locking and multiple oscillating attractors for the coupled mammalian clock and cell cycle. Proceedings of the National Academy of Sciences. 111(27):9828-9833.

[2506] Rizk A, Paul G, Incardona P, Bugarski M, Mansouri M, Niemann A, Ziegler U, Berger P, Sbalzarini IF. 2014. Segmentation and quantification of subcellular structures in fluorescence microscopy images using Squassh.. Nat Protoc. 9(3):586-96.

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