BioImage Information Index

Biii is a website for organizing bioimage analysis resources. We manually edit following pages, for you to search tools, workflows and functions for bioimage analysis:

Please enjoy!



Sebastien's picture

CellSegm

An automated MATLAB tool for segmentation of surface stained cells

kota's picture

BioImageXD

BioImageXD is a free open source software package for analyzing, processing and visualizing multi-dimensional microscopy images. It's a collaborative project, designed and developed by microscopists, cell biologists and software engineers from the Universities of Jyväskylä and Turku in Finland, Max Planck Institute CBG in Dresden, Germany and collaborators worldwide. BioImageXD was published in the July 2012 issue of Nature Methods.

kota's picture

Aquiarium

Acquiarium is for carrying out the common pipeline of many spatial cell studies using fluorescence microscopy. It addresses image capture, raw image correction, image segmentation, quantification of segmented objects and their spatial arrangement, volume rendering, and statistical evaluation.

kota's picture

Tubeness

Package/Library: 
Fiji
uxisarmi's picture

BBBC003v1 MOUSE EMBRYOS

Biological object: 
Mouse embryos
Size (MB): 
3
devrim's picture

Annotated two-photon images of dendritic spines

Biological object: 
Dendritic spines
Size (MB): 
10
tischi's picture

2-D Colocalisation in Cells

Workflow Language: 
CellProfiler Pipeline

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