BioImage Information Index

Biii is a website for organizing bioimage analysis resources. We manually edit following pages, for you to search tools, workflows and functions for bioimage analysis:

Please enjoy!



uxisarmi's picture

BBBC002v1

Biological object: 
Drosophila melanogaster Kc167 cells
Size (MB): 
4
kota's picture

OpenCV

OpenCV is released under a BSD license and hence it’s free for both academic and commercial use. It has C++, C, Python and Java interfaces and supports Windows, Linux, Mac OS, iOS and Android. OpenCV was designed for computational efficiency and with a strong focus on real-time applications. Written in optimized C/C++, the library can take advantage of multi-core processing. Adopted all around the world, OpenCV has more than 47 thousand people of user community and estimated number of downloads exceeding 6 million.

irene's picture

Local Phase Quantization (LPQ) descriptors

Package/Library: 
MATLAB
Matlab Image Processing Toolbox
kota's picture

Amira

3D visualization and analysis software

dscho's picture

OMERO

OMERO is a free, open source image management software. It is client-server based system which supports 5D images, including big images and high-content screening data. Data are stored on a server using relational database. They are accessed using 3 main clients, a desktop client, a web client and a command line tool. There are bindings from OMERO to other image analysis packages, like FLIMfit, OMERO.searcher. The data in OMERO are organized in groups. A user can be a member of one or more groups.

kota's picture

CATMAID

Collaborative Annotation Toolkit for Massive Amounts of Image Data

Perrine's picture

alkaline comet assay image

Biological object: 
Cultured cell
Size (MB): 
0
Niko Kladt's picture

scikit-image

Image processing library for Python

scikit-image is a collection of algorithms for image processing. It is available free of charge and free of restriction. We pride ourselves on high-quality, peer-reviewed code, written by an active community of volunteers.

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