BioImage Information Index

Biii is a website for organizing bioimage analysis resources. We manually edit following pages, for you to search tools, workflows and functions for bioimage analysis:

Please enjoy!



maree's picture

Pyxit Landmark detection

Tags: 
Package/Library: 
Cytomine
irene's picture

Local BInary Pattern (general code)

Package/Library: 
MATLAB
david.rousseau's picture

Muscle fiber counting

Workflow Language: 
Python
irene's picture

matlabPyrTools

GiovanniCardone's picture

Advanced Cell Classifier

Advanced Cell Classifier is a data analyzer program to evaluate cell-based high-content screens and tissue section images. The basic aim is to provides a very accurate high-content screen analysis with minimal user interaction, offering access to a variety of advanced machine learning methods.

lplantard's picture

SIMcheck

an open source ImageJ plugin suite for super-resolution structured illumination microscopy data quality control

maree's picture

Pyxit segmentation model prediction

Package/Library: 
Cytomine
maree's picture

Pyxit segmentation model builder

Package/Library: 
Cytomine
irene's picture

Colormine

Nuget package for conversion between color spaces and calculation of color differences.

Color spaces available:

-CMY
-CMYK
-HSL
-HSB
-HSV
-CIE L*a*b*
-Hunter LAB
-L*C*h*
-L*u*v*
-RGB
-XYZ
-YXY

Color differences available:

-CIE76
-CMC l:c
-CIE94
-CIE2000

Online example at http://colormine.org/color-converter

Pages

components