Workflows


Organise Image Data using OMERO

graemeball's picture
Tags: 
Workflow Author: 

OME Developers

Dependencies: 
Workflow Language: 
Comment / Instructions: 

OMERO is an image database application consisting of a server and several clients, the most important of which are the web client and Insight java application. Metadata are extracted from images that have been imported (either using the Insight client, or directly from the filesystem), and this is accessible for search. A standardised hierarchy of Project > Dataset > Image in which image thumbnails can be viewed, combined with group membership, tagging, and attachment of results and other files gives a powerful framework for organising scientific image data. Images can also be analysed server-side or client-side within the base OMERO application or one of its many extensions.

OMERO has APIs for extension in multiple languages: java, python, C++ and MATLAB; and such extensions have easy access to the image data and metadata in the database.

Rating: 
4
Average: 4 (1 vote)