Workflows


Register Virtual Stack Slices

marielaureb's picture
Workflow Author: 

Albert Cardona, Ignacio Arganda-Carreras and Stephan Saalfeld

Dependencies: 
Workflow Language: 
Dimension: 
3D
Input data type: 
stack
Output data type: 
registered image
Comment / Instructions: 

A Jython script using the plugin : Register Virtual Stack Slices

It takes a sequence of image slices stored in a folder, and delivers a list of registered image slices (with enlarged canvas). One of the images in the sequence can be selected by the user as reference and it will remain intact.

The plugin can perform 6 types of image registration techniques:

  • Translation
  • Rigid (translation + rotation)
  • Similarity (translation + rotation + isotropic scaling)
  • Affine
  • Elastic (via bUnwarpJ with cubic B-splines)
  • Moving least squares

All models are aided by automatically extracted SIFT features.

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