Software / Libraries


neuTube

czhang's picture

neuTube [1] is open source software for reconstructing neurons from fluorescence microscope images. It has a nice interactive system. It has 3D viewer, which can be clicked in 3D and perform neuron tracing semi-automatically. It can automatic recognize branching points as junctions. Traced neurons can be exported to swc format, which could be imported by various software packages.


References

License: 
This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.
References: 
10.1523/ENEURO.0049-14.2014
Platform(s): 
Windows 64bit, OS X 10.7+, Fedora
Target Audience(s): 
Developer, Analyst, User
Type(s): 
application
Rating: 
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Author(s): 
L. Feng, T. Zhao, and J. Kim