Software / Libraries


SIMToolbox

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SIMToolbox: a MATLAB toolbox for structured illumination microscopy

SIMToolbox is an open-source, modular set of functions for MATLAB designed for processing data acquired by structured illumination microscopy. Both optical sectioning and super-resolution applications are supported. The software is also capable of maximum a posteriori probability image estimation (MAP-SIM), an alternative method for reconstruction of structured illumination images. MAP-SIM can potentially reduce reconstruction artifacts, which commonly occur due to refractive index mismatch within the sample and to imperfections in the illumination.

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References

License: 
GPL
References: 
10.1093/bioinformatics/btv576
Ecosystem: 
MATLAB
Platform(s): 
MATLAB
Target Audience(s): 
Analyst, User
Type(s): 
toolbox, application
Rating: 
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Author(s): 
Pavel Křížek, Tomáš Lukeš, Martin Ovesný, Karel Fliegel, and Guy M. Hagen