Software / Libraries


SuReSim

irene's picture

SuReSim (Super Resolution Simulation) is an open-source simulation software for Single Molecule Localization Microscopy (SMLM). The workflow of the SuReSim algorithm starts from a ground truth structure and lets the user choose to either directly simulate 3D localizations or to create simulated *.tiff-stacks that the user can analyze with any given SMLM reconstruction software.

A 3D structure of any geometry, either taken from electron microscopy, designed de-novo from assumptions or known structural facts, is fluorophore-labeled in silico. A defined set of parameters is used to calculate and visualize the 3D localizations of the corresponding labels.

The software package is accompanied with a library of model structures that can be imported and simulated.

Users manual with tutorial provided.

License: 
GNU GPLv3
References: 
10.1038/nmeth.3775
Ecosystem: 
Java
Platform(s): 
All
Target Audience(s): 
User
Type(s): 
Simulation Software
Rating: 
0
No votes yet
Author(s): 
Varun Venkataramani, Frank Herrmannsdörfer, Mike Heilemann and Thomas Kuner
Image: