localization microscopy

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SuReSim

SuReSim (Super Resolution Simulation) is an open-source simulation software for Single Molecule Localization Microscopy (SMLM). The workflow of the SuReSim algorithm starts from a ground truth structure and lets the user choose to either directly simulate 3D localizations or to create simulated *.tiff-stacks that the user can analyze with any given SMLM reconstruction software.

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Lama: The LocAlization Microscopy Analyzer

LocAlization Microscopy Analyzer (LAMA) is a software tool that contains several well-established data post processing algorithms for single-molecule localization microscopy (SMLM) data. LAMA has implemented algorithms for cluster analysis, colocalization analysis, localization precision estimation and image registration. LAMA works with a graphical user interface (GUI), and accepts simple input data formats as supported by various single- molecule localization software tools.

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SR-Tesseler

Localization-based super-resolution techniques open the door to unprecedented analysis of molecular organization. This task often involves complex image processing adapted to the specific topology and quality of the image to be analyzed.

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TetraSpeck bead drift example

Biological object: 
TetraSpeck beads
Size (MB): 
1
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Tubulins - High Density

Biological object: 
Tubulin
Size (MB): 
71
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Tubulin Conj-AL647

Biological object: 
Tubulin
Size (MB): 
914
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Snow

Biological object: 
In silico
Size (MB): 
1
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FtsZ-Dendra2 C. crescentus live

Biological object: 
C crescentus
Size (MB): 
1
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Tracing data using PALMsiever

Workflow Language: 
Human Language
MATLAB
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DBSCAN clustering using PALMsiever

Workflow Language: 
MATLAB

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