tracing

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tpengo's picture

Tracing data using PALMsiever

Workflow Language: 
Human Language
MATLAB
dscho's picture

FARSIGHT

A General purpose image processing toolkit written in C++ based on ITK, VTK, Qt, and Boost. Main features: algorithms for cell segmentation, cell tracing, cell tracking, and vessel tracing. Registration and mosaicing algorithms for large scale datasets. Visualization tools actively linked to inspect and edit results.
Strengths:
- Open-source, free, multi platform, code is highly parallelized, uses git for version control
- Large scale processing, also efficient visualization of such datasets.
- Active learning module for classification

Ofra Golani's picture

WIS-NeuroMath

WIS-NeuroMath - is a software tool for automated analysis and quantification of fluorescent microscopy images of Nerve cells, in both in vivo and in vitro preparations. It allows for accurate detection of neurites in challenging images. Following neurite detection, different types of processing can be carried: Cell Morphology of cultured neurons, Neurite Length Analysis and Ganglion Explant Analysis.
Usefull also for angiogenesis analysis.

Anonymous's picture

NeuronJ

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