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3D Object Segmentation and Tracking

Workflow Language: 
Human Language
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Autofocus

Workflow Language: 
ImageJ Macro Language
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Orthogonal Views

Package/Library: 
Fiji
ImageJ
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Vaa3D

Vaa3D [1, 2, 3] is a handy, fast, and versatile 3D/4D/5D Image Visualization & Analysis System for Bioimages & Surface Objects. It also provides many unique functions ... It is also Open Source, supports a very simple and powerful plugin interface and thus can be extended & enhanced easily...

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v3dlib

v3dlib library is a cross-platform C++ library written in wxWidgets for displaying 3D images. The most important part of the library is a window that can display 3D images of various types (RGB, RGB16, GRAY8, GRAY16, and float). The window can easily be extended of a new functionality and is used in many applications (e.g., viewer3d, Acquiarium, batchcrop, and others).

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ITK-SNAP

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CATMAID

Collaborative Annotation Toolkit for Massive Amounts of Image Data

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AutoQuant

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