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ilastik - Automatic Tracking

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ilastik - Density Counting

Package/Library: 
ilastik
VIGRA
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ImageJ/MosaicSuite

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ImarisSliceView

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OpenCV / 2D Features

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VIGRA

VIGRA is a free C++ and Python library that provides fundamental image processing and analysis algorithms. Its generic architecture allows it to be used in many different application contexts and ecosystems. It is designed as an intelligent library (using the C++ template mechanism) which allows users to write code at a fairly high level of abstraction and optimizes away the abstraction overhead upon compilation. It can therefore work efficiently on very large data and forms the basis of ilastik and CellCognition.

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WIS-NeuroMath

WIS-NeuroMath - is a software tool for automated analysis and quantification of fluorescent microscopy images of Nerve cells, in both in vivo and in vitro preparations. It allows for accurate detection of neurites in challenging images. Following neurite detection, different types of processing can be carried: Cell Morphology of cultured neurons, Neurite Length Analysis and Ganglion Explant Analysis.
Usefull also for angiogenesis analysis.

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