cell segmentation

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SLDC

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imageHTS

imageHTS is an R/Bioconductor package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote data and facilitates the dissemination of high-throughput microscopy-based datasets.

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Voronoi ImageJ

Package/Library: 
ImageJ
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MIATool

The Microscopy Image Analysis Tool (MIATool) is a software application designed for the viewing and processing of N-dimensional array of images. At its core is an image viewer which allows the traversal of an N-dimensional array of images. Besides the standard display as pixels of varying intensity values, options are available to view the images as mesh or contour plots. The current version of MIATool supports four different image editing tools which can be used to process the images displayed in the viewer.

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Distance Analysis (DiAna)

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FreeD

Free-D is a three-dimensional (3D) reconstruction and modeling software. It allows to generate, process and analyze 3D point and surface models from stacks of 2D images.

Free-D is an integrated software, offering in a single graphical user interface all the functionalities required for 3D modeling. It runs on Linux, Windows, and MacOS.

Free-D is developed by the Modeling and Digital Imaging team of the Institut Jean-Pierre Bourgin, INRA Versailles, France.

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Tomato

Biological object: 
Tomato tissue
Size (MB): 
1
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ABSnake

Package/Library: 
ImageJ
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Visiopharm

The software is designed for pathologists.
Image analysis protocols are built from graphical user interfaces; there is no need for programming experience or an extensive training program.

Cloud and deployed solutions are available.
Visiopharm can be employed to develop workflows (apps) for the user.

Modular structure with multiple packages:
VisiomorphDP™
TissuemorphDP™
Arrayimager™
Tissuealign™
Visiomorph™
Tissuemorph™
Microimager™
Fluoimager™

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MountainsMap

MountainsMap is a surface imaging and metrology software published by the company Digital Surf.
Its main application is micro-topography, the science of studying surface texture and form in 3D at the microscopic scale.
The software is used mainly with stylus-based or optical profilometers, optical microscopes and scanning probe microscopes.

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