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CellProfiler

CellProfiler is designed to enable biologists without training in computer vision or programming to quantitatively measure cell or whole-organism phenotypes from thousands of images automatically. The researcher creates an analysis pipeline from modules that find cells and cell compartments, measure features of those cells to form a rich, quantitative dataset that characterizes the imaged site in all of its heterogeneity.

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ilastik - Carving

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ilastik - Manual Tracking

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ilastik - Object Classification

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ilastik - Automatic Tracking

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ilastik - Density Counting

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