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ImageJFX

NOT TESTED YET: ImageJFX is a software built on Fiji which aims are providing a user interface easing the construction of workflows, and integrating help and tutorial messages. Its purpose is to decrease the learning curves of scientist and speed up common operations. Available in beta version on registration for now (December 2016).

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Angiogenesis Analyzer for ImageJ

Workflow Language: 
ImageJ Macro Language
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FibrilTool

Workflow Language: 
ImageJ Macro Language
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Image Processing, Visualization and quantification class by Sam Johnson, Duke University

Image Processing, Visualization and quantification class

Mixture of some lecture-format background information and practical computer exercises using Fiji, slides and example images from 1 day course.

Topics covered in the class include:

Ofra Golani's picture

Image Analysis Course for Life Science by Morten Larsen, University of Copenhagen

Image Analysis Course for Life Science Faculty.
Material includes: slides, hands-on exercises using ImageJ and related data.
There is a full lecture on ImageJ macro language (session 12).
Website: [http://www.matdat.life.ku.dk/ia/]

Session 1: The basics: Images - Digital image representation, Image processing and image analysis, Concerns at image acquisition, Pixel-wise transformations, Visual enhancement

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ImageJ Bandpass filter

Package/Library: 
ImageJ
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Median filter via ImageJ

Workflow Language: 
Icy Protocol
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Image Processing and Analysis with ImageJ

In this workshop you will learn how to apply image analysis and processing techniques, using the public domain software ImageJ and some additions (plugins and macros). The first part explains the tools available in ImageJ while the second part is centered around image analysis and processing methods. Exercises, solutions and example images are available.

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Manual Tracking with ImageJ

Workflow Language: 
Java
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Moment thresholding

Package/Library: 
Aphelion
Fiji
ImageJ

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