batch-processing

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Fiji

Fiji is just ImageJ: a distribution of ImageJ (and ImageJ2) together with Java, Java 3D and a lot of plugins organized into a coherent menu structure. The main focus of Fiji is to assist research in life sciences. It is a free, open-source, community-driven project.

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Difference of Gaussians

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Image Calculator

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Seeded Watershed

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Sigma Filter

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Image Writer

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ImageJ2 Plugin KNIME

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Interactive Annotator

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Local Thresholding

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