fluorescence microscopy

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czhang's picture

neuTube

neuTube [1] is open source software for reconstructing neurons from fluorescence microscope images. It has a nice interactive system. It has 3D viewer, which can be clicked in 3D and perform neuron tracing semi-automatically. It can automatic recognize branching points as junctions. Traced neurons can be exported to swc format, which could be imported by various software packages.

Niko Kladt's picture

easyFRAP

Very simple application that lets you load your time-lapse intensity data to generate the normalized FRAP recovery curve and perform exponential curve fitting.

sommerc's picture

CellCognition

Introduction

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