image processing

Primary tabs

dscho's picture

Icy

Reproducing an experiment doesn’t stop at the bench when images are concerned. Icy is an open source bioimaging software package that aims to provide a framework for authors to share, and others to reproduce, research once the sample hits the microscope. Icy was released in April 2011 and is being developed at the Quantitative Image Analysis Unit at the Pasteur Institute in France by Jean-Christophe Olivo-Marin and his team.

dscho's picture

PINK

Pink is an generic image processing library with inclination towards morphology, discrete topology, skeletonization and image segmentation. Operators support 2D, 3D and 4D images where there exist algorithms for such extensions. There is no practical limitation about the image site. It is suitable for general image processing or as a preprocessing / postprocessing toolset for specific image processing problems.
There are several successfull applications of PINK in the fields of Biology, Material Sciences, Education and Image Processing Research.

ukoethe's picture

VIGRA

VIGRA is a free C++ and Python library that provides fundamental image processing and analysis algorithms. Its generic architecture allows it to be used in many different application contexts and ecosystems. It is designed as an intelligent library (using the C++ template mechanism) which allows users to write code at a fairly high level of abstraction and optimizes away the abstraction overhead upon compilation. It can therefore work efficiently on very large data and forms the basis of ilastik and CellCognition.

Ofra Golani's picture

Image Analysis for Biology

Thourough introduction to image analysis using matlab
Caltech, MBL Physiology Course 2008

Anonymous's picture

EnhanceEdges

Anonymous's picture

3D Area

Package/Library: 
Icy
Anonymous's picture

Crop

Pages

Subscribe to image processing