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volker's picture

MicrobeJ

This is an ImageJ plugin to analyze bacterial cells. It provides a user-friendly interface and a powerful suite of detection, analysis and data presentation tools. It works with individual phase or fluorescence images as well as stacks, hyperstacks, and folders of any of these types. Even large image sets are analyzed rapidly generating raw tabular data that can either be saved or copied as is, or have additional statistical analysis performed and graphically represented directly from within MicrobeJ, making it an all-in-one image analysis solution.

kota's picture

MTrackJ

Package/Library: 
Fiji
ImageJ
kota's picture

MicrobeTracker

Package/Library: 
MATLAB
kota's picture

SLOTH

Workflow Language: 
Python
christoph_moehl's picture

Measure cell volume over time

Workflow Language: 
Human Language
ImageJ Macro Language
Sebastien's picture

Cells tracking in tissue

Workflow Language: 
ImageJ Macro Language
MATLAB
christoph_moehl's picture

Tracking of Microtububule Tips

Workflow Language: 
MATLAB
kota's picture

OpenCV

OpenCV is released under a BSD license and hence it’s free for both academic and commercial use. It has C++, C, Python and Java interfaces and supports Windows, Linux, Mac OS, iOS and Android. OpenCV was designed for computational efficiency and with a strong focus on real-time applications. Written in optimized C/C++, the library can take advantage of multi-core processing. Adopted all around the world, OpenCV has more than 47 thousand people of user community and estimated number of downloads exceeding 6 million.

kota's picture

Volocity

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