Workflows

Bio-image analysis workflows
Workflow Dependencies Language Rating Updatedsort ascending
Whole-slide histology analysis pipeline scripts CellProfiler, OpenSlide
0
No votes yet
12/09/2014 - 09:59
3D cell tracking and quantification of shape changes MATLAB MATLAB
0
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12/09/2014 - 09:51
ZVI Extractor ImageJ ImageJ Macro Language
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12/09/2014 - 09:51
Optical Flow Icy Icy Protocol
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12/09/2014 - 09:48
Batch spot detection with custom output Icy
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12/09/2014 - 09:41
Measure distance of organelles from nucleus in 3D Imaris, MATLAB
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12/09/2014 - 09:32
Object Classification using ilastik ilastik, VIGRA C++, Python
0
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12/08/2014 - 17:56
Pixel Classification using ilastik ilastik, VIGRA C++, Python
5
Average: 5 (2 votes)
12/08/2014 - 17:43
Counting foci ImageJ Java
0
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12/08/2014 - 17:43
FLIM / SLIM Analysis Fiji, ImageJ C, C++, Java
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12/08/2014 - 17:40
3D estimation of synaptic vesicle distribution in serial section TEM (ssTEM)
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12/08/2014 - 17:29
Blob segmentation Fiji Java
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12/08/2014 - 17:10
Single particle tracking Fiji, ImageJ
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12/08/2014 - 17:02
White Balance Fiji, ImageJ ImageJ Macro Language
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12/08/2014 - 16:22
Automatic 2D/3D Tracking using ilastik ilastik, VIGRA C++, Python
4
Average: 4 (1 vote)
12/08/2014 - 16:19
Measuring confluence in adherent cell cultures Fiji, ImageJ
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12/08/2014 - 16:07
Noise Suppression using Simple Spatial Filters ImageJ Java
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12/08/2014 - 16:03
Interactive Density Counting using ilastik ilastik, VIGRA C++, Python
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12/08/2014 - 16:00
Human cytoplasm-nucleus translocation assay CellProfiler CellProfiler Pipeline
0
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12/08/2014 - 14:46
Cell segmentation and measurements CellProfiler CellProfiler Pipeline
4
Average: 4 (1 vote)
12/08/2014 - 14:43

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